Author Archives: Susann Lees

Skyline has had support for small molecules and metabolites for years now– but I still have a lot of trouble setting it up and have to bug smarter (and typically younger…) people for help a lot.  What I could use is a Step-by-Step protocol and template files I can download.  — and here it is! Continue reading “Skyline for small molecules/metabolomics and Skyline 20.1!”

Wow. Do I ever love ProteomeXchange! Skip my reading and go to MASSIVE and get proteomic data from cancer cells infected with a coronavirus and — if you’re into that sort of thing — you can get metabolomic data here and lipidomic data here!  The RAW files currently heating my apartment may not have beenContinue reading “Publicly available (unpublished?) proteomic, metabolomic and lipidomic (MERS-CoV) coronavirus data!”

You should check out this new preprint here!  What a great week or 10 days for proteomics. Holy cow. January was kind of laggy and then — BOOOOOOOOOOOM –!! Okay — in yet another that is going into a file called “January 2020 papers you must read!!” — which — is too many words forContinue reading “Single cell RNASeq + Plasma Proteomics + Machine Learning!”

…and the 2020 Grammy for most eye grabbing title goes to…. …this brand new study that is the first or second thing I get to once I’m safely behind the publisher’s financial security of a university library paywall…. To be clear, I haven’t read this and I’ll probably doubly verify the QC/QA checks on myContinue reading “Predicting human life span with deep plasma proteomics??”

Edit 2/10/2020: UniProt has resource up. These are better. You can check them all out here! I was looking for a complete protein FASTA database for the Wuhan coronavirus and came up empty. The NCBI database was just updated yesterday (direct link here) so I pulled the newest sequences and just assembled them into aContinue reading “Wuhan Coronavirus (2019-nCoV) Complete Protein FASTA download”